Background information on the Planomonospora example

This example analyzes a subset of 10 Planomonospora strains showing differential antibiotic activity against Staphylococcus aureus (originally described here).

By using the Phenotype score filter, we see that antibiotic activity is associated with a single phylogroup ("S"). Closer inspection shows that activity is likely associated with siomycin A, a known antibacterial compound.

For more information, see the Documentation.

Total Samples	11
Molecular Features	143
Removed Mol. Features	74
FERMO-CORE Version	0.6.3
Run date (YYYY-MM-DD)	2025-04-16

Sample name	Total features	Retained features	Diversity	Specificity	Mean novelty	Phylogroup	Medium
5440_5439_mod.mzXML	22	22	0.42	0.0	0.12	A2	AF
5432_5431_mod2.mzXML	27	27	0.62	0.0	0.15	A2	AF
5425_5426_mod.mzXML	20	20	0.5	0.04	0.19	C	AF
5434_5433_mod.mzXML	34	34	0.71	0.0	0.13	S	AF
5450_5449_mod.mzXML	18	18	0.29	0.04	0.1	V2	AF
5444_5443_mod.mzXML	19	19	0.46	0.0	0.19	C	AF
5452_5451_mod.mzXML	35	35	0.75	0.0	0.15	S	AF
5446_5445_mod.mzXML	22	22	0.5	0.0	0.13	S	AF
5456_5455_mod.mzXML	30	30	0.67	0.0	0.15	S	AF
5458_5457_mod.mzXML	30	30	0.67	0.09	0.21	C	AF
D3_H3_mod.mzXML	22	22	0.39	0.12	0.17	N/A	N/A

Feature ID
Precursor m/z
Retention time (min)
Feature intensity (relative)	Click on any feature in the main chromatogram overview
Feature intensity (absolute)
Feature novelty score
Feature blank associated
Network ID

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Sample	Intensity	Area
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Sample: 5440_5439_mod.mzXML

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Background information on the Planomonospora example

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Main Chromatogram

Sample: 5440_5439_mod.mzXML

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